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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … Combining forces with UC Berkeley to seek elusive gene-editing proteins …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and … includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage …
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Filling in the Plant Tree of Life
… we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy crops. But most available genomes are from narrow …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … (BDO). To do so, the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 that … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics … getting these data on our system. If it’s not based on the gene model, that should be ok generally. We can work with you to re-map the data. If your … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling the small fraction of a genome that contains … could be considered.” Olmstead’s project focused on the genetic mechanisms of chemotaxis in the Arabidopsis …
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Creating an Energy Market for Miscanthus
… What grass is a prized ornamental and a bioenergy plant? Meet Miscanthus , an attractive addition to … and a potential fuel for the future. But, to be competitive in the market, both energy policy and Miscanthus will need some upgrades. In this episode, hear from scientists working on …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these genes have moved from the mitochondria into the nuclear … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Tina Clarke
… Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined the Joint … Era of Networks (Sybase Acquired Company), Pacheco, CA HR Generalist, 1999 – 2000 TriNet VCO, San Leandro, CA HR …
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Integrating Experimentation with Data
…   Registration for this meeting has closed           Registration fees:                   General attendees: $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome … national scientific user facilities dedicated to advancing research in bioenergy and environmental science. They …
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