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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … describe a workforce development program for higher education that develops skills in fungal biology and genomics.  … genomes, but unfortunately there are not many available to study. This is because most fungal clades have no reference …
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JGI-UC Merced Interns Share Their 2021 Experiences
… JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment activities. For some students in … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will bring together … and applying laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic studies.  This conference …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their … and the annual user meeting. The UEC also acts as a liaison to the user community and the broader scientific …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their … Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, … performed in its User Facilities, is a legally binding contract.   All User researchers must have their … After your proposal is approved, the Contracts Officer will send required paperwork to your …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to … the Biological Small-Angle Neutron Scattering (BioSANS) instrument at the Center for Structural Molecular Biology (CSMB) … You are requesting access to capabilities, instrumentation, and analytics, and each of the facilities. …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for … take radioactive isotopes into EMSL and use them on the instruments because it has a long-term negative effect on …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist …
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Len Pennacchio
… joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a … of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological …
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