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Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying … the project was co-led by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes … of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Tracing the Evolution of Shiitake Mushrooms
… are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down … project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER funds) to F.J.R.-D., S.C., and …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the absence … Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … nutrient flux, and identify microbes assimilating labeled compounds. During this webinar, EMSL’s Mary Lipton and the … time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … New York. He and Rokhsar have  recently published a Nature Communications paper that builds off their early … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an … workshops. Of common interest is the method development to study active sites or single cells in their functional … latest advancements in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we …
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Jasmyn Pangilinan
… tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, … thereby accelerating critical insights for the JGI User community. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex wiring behind a city’s power grid. Just as the flow … hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species …
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