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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in perennial grasses using Panicum … global population, drought is an obstacle toward improving crop yields for food and fuel use. In Nature …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is complicated because, … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley … workshops. Of common interest is the method development to study active sites or single cells in their functional … latest advancements in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she works to develop and improve supporting pipeline efficiency through streamlined workflows, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … encodes for an enzyme called RNS-directed RNA Polymerase (RdRP), necessary for replicating the RNA genome replication, … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … biologist at the JGI. “We had to work really hard to make them work for the kinds of plant samples we study — and even go beyond, putting four different species …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … data and expertise to the global research community to study complex biological and environmental systems. The … products and next-generation technologies, and toward a secure energy portfolio for DOE priorities.  Bik is an …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf Vardi, who delved into algae blooms and the alga-viral … great impact on these algal blooms. So Vardi and his group study one specific alga,  Emiliania huxleyi  (sequenced by …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that … or 44% of expressed genes respond to drought stress regardless of whether drought was applied before or after the …
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