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… microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out …

… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer …

… his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s …

… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …

… is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic … cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …

… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … year in Berkeley, Calif. Convening the “viral ecogenomics” community, the VEGA symposium provides networking …

… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his … JGI researcher, Zhong Wang, have adjunct faculty positions with the SNS, and Wang’s group was hosting another QSB … JGI Director Eddy Rubin. “QSB faculty are active DOE JGI Community Science Program collaborators, and UC Merced has …

… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave … immersed in not only their work, but the opportunity to collaborate with and learn from fellow researchers onsite as …

… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … the completeness of these sequences and complements a community effort to develop guidelines and best practices …

… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … Agreement (2003), the JGI recognized the need to engage the community to inform necessary changes to JGI data policies. … to balance its  Data Release and Utilization Policies with the DOE mandate to provide data access widely to the …