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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in the Arthur R. Marshall Loxahatchee National Wildlife Refuge, a 226-square mile area of the northern …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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JGI Early Career Researchers Featured in mSystems Special Issue
Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on … planet’s viral diversity has advanced drastically, aided by genome assembly from metagenomes. This is a critical step …
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Better Crops With a Pointillist Approach to Plant Genomics
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David Goodstein
… gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative … and gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes … structure. Nature Communications 8, 1. Goodstein et al., 2012. Phytozome: a comparative platform for green plant …
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iPHoP: A Matchmaker for Phages and their Hosts
… led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …
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Mapping the microbiome milieu
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Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
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The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation
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