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Meeting Code of Conduct
All participants and staff of the JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code … requires an environment that recognizes the inherent worth of every participant. We invite all those who participate to …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the Biological … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the …
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SIPs with Standards
SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex Malmstrom …
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Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back … see as the overall “theme” of your research? I know you’ve generally worked in various marine organisms. Except during …
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Benjamin Cole
… their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  … of the JGI’s Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism …
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