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An Automated Tool for Assessing Virus Data Quality
… and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … of metagenome-assembled viral genomes . The Impact The microbes that play key roles in cycling nutrients such as …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other … layers. The architecture of these algorithms, inspired by communication networks found in nature, allows machines … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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JGI-UC Merced Interns Share Their 2021 Experiences
… the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … Line Between Plasmids and Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria …
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Len Pennacchio
… on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint … in human and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from … … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data …
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Creating an Energy Market for Miscanthus
What grass is a prized ornamental and a bioenergy plant? … in the market, both energy policy and Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology and the economic …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Tanja Woyke
… at the Eberhard Karls University Tübingen (Germany), Dr. Woyke pursued her postdoctoral research at the DOE Joint … of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … Highly Cited Researcher, Biology and Biochemistry, top 1%, by Clarivate Analytics 2020 van Niel International Prize for …
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Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
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Succession in the petroleum reservoir microbiome through an oil field production lifecycle
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