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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better …
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Triggering Morel Fruiting
… the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking … assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … the key physiological factors that trigger forest mushrooms with diverse trophic modes to convert from vegetative …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible … and analysis. This way, JGI users — both primary, data-generating users, as well as secondary, data-downloading … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI …
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Boosting Small Molecule Production in Super “Soup”
… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … to keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal … University describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital … these scientists (now at Stanford University) collaborated with the JGI. Working together, they found most bacterial …
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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” … the other five only distantly related to known methanogens. With the help of this information, the researchers found …
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Trent Northen
… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle …
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VEGA Symposium
… Bird rates available now General & Berkeley Lab Attendee – $250 Student – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & … sessions. Beyond providing an overview of the latest discoveries related to functional characterization of novel …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , … two kinds of scientific revolutions,” Ari Patrinos opened with this quote from Thomas Kuhn in his 25th Anniversary …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … National Laboratory – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! … This is the first science Nobel awarded to two women, with Charpentier and Doudna bringing the total number of …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and … that I’ve been in my PhD program, I’ve been really focused with academia. And so this was the first time I was … my interest in bioformatics, so that’s what I’m gonna take with me to the future.  Shari Larsen : I didn’t grow up with …
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