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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions … JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January …
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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … things like biomass and  biofuels . However, AMF and the microbial communities they inhabit are notoriously difficult … an arduous wet lab process. Typically, after incubating microbial communities with labeled food or water, the …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How … A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes can be included, which do …
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JGI Accepts 17 Proposals for Community Science Program
… (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. … State University and colleagues are interested in the microbial communities that live on Alaska’s glacially … public agricultural research corporation, is focused on microbial interactions on the Amazon forest floor. Alicia …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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JGI announces 2024 Functional Genomics awardees
… Below find a list of the nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … has changed our understanding of the microbiome and the microbial sciences field. Roux will be recognized at the … His project, “Characterizing Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic … microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in name first … viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any given time. …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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