Results

Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Busting the Unbreakable Lignin
… plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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Site-Selective C–H Halogenation Using Flavin-Dependent Halogenases Identified via Family-Wide Activity Profiling
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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE
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