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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … single cell and systems biology, omics, and big data science, machine learning for experimental science, energy … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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JGI@25: Studying Sorghum’s Survival Skills
… its Sorghum bicolor reference genome and releases it to the community. 2014: GENCODE project begins. To support growing … of sorghum begins. Enabled by the JGI’s Community Science Program, Todd Mockler and his team collect diverse lines of … have also been sequenced, and the EPICON studies are still informing work on sorghum’s drought tolerance.     …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… MycoCosm — a platform widely used across the research community — the work lowers technical barriers for … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a … genome assemblies in the National Center for Biotechnology Information's GenBank. This led to identifying 6,467 of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … 2021 Laboratory Directed Research and Development (LDRD) program. Cole also received a DOE  Early Career Research … this spatial transcriptomics data captured molecular information from both plant cells and fungal cells. “Because …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a novel archaeum from … this approach through the Emerging Technologies Opportunity Program (ETOP). Following that work, they partnered once …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative … under the Facilities Integrating Collaborations for User Science (FICUS) initiative through an award to MBD and …
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DOE JGI Interns Share Their Summer Experiences
… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate students … Merced Genomics Distinguished Graduate Internship Program, Susannah Tringe and Axel Visel hosted Imelda …
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Biotech Partners
… Biotech Partners provides integrated and high-touch programs that empower underrepresented high school students … They encourage students to pursue personal, academic, and professional development experiences through in-classroom …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … population dynamics in co-culture. These experiments aim to inform the engineering of stable, synthetic microbial … group of bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted … microbes. A comprehensive map of viruses including host information, Roux says, would be the foundation upon which … Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   …
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Matthew Kellom
… places that are considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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