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Cultivating Symbiotic Antarctic Microbes
… cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … , a team led by Rick Cavicchioli at the University of New South Wales along with researchers at the U.S. …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited … the first time. A 2020 Nature Genetics paper describing the genomes of the five major cotton lineages. Grimwood was also …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… that will enable scientists to explore and collect data in new ways,” she said. “We’re excited to be able to offer this … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects … looking at wildfire impacts, carbon cycling, and the microbial dynamics in freshwater lakes over a several year …
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Overview of the Genomes OnLine Database (GOLD)
… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … that indicate repelled attempts to infect and lyse the microbial cells. This demonstration of the virus-host arms …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has advanced their work on the … at work around the globe Keynote Talk Title : “Wild Microbial Ecology” Microbial ecologist  Bruce Hungate , of … he and collaborators have been able to explore all kinds of new questions. “How fast do these organisms grow and die in …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How … are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) metagenomes …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … sequences are moving around, disappearing and appearing in new places.” With new insights available, the power grid of gene regulation is …
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest
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Rapid Response of Nitrogen Cycling Gene Transcription to Labile Carbon Amendments in a Soil Microbial Community
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