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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. … metal corrosion in oil pipes. Scientists have tried to study cyclic di-GMP and cellular networks with fluorescent biosensors before, but such sensors require external illumination, making them difficult to use …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage … through the more than 2 million viral sequences available in IMG/VR v3. …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying … upon an interesting observation in Chlamy. Most plants require the nutrient copper for photosynthesis; Chlamy does …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, … BOOST provides a suite of tools to automate sequence design for assembly by …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements … work for difficult user projects, including those that require fluorescence activated cell sorting and non-standard … University of Delaware BA in Biology, Boston University ( magna cum laude ) …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in perennial grasses using Panicum … complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … recently published a Nature Communications paper that builds off their early collaborations that could help crop … These days, Session is starting his lab at Binghamton “studying polyploids and transposon evolution, expanding on …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an … interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with the aim of intensifying … latest advancements in imaging-related technology and instrument-analytical methods.  “The microfluidic devices we …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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