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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the … comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to … Deputy of Genomic Technologies …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … This work was partially supported by awards from US Department of …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology … noticed that a large percentage of Phytozome users who were seeking to download all the data associated with the latest … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and … The JGI Advisory Committee (JAC) is convened by the JGI Director to …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data … Proposers are encouraged to review the JGI’s sample …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program lead, shone a spotlight on  ammonia …
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JGI-USCCN Strain Sequencing Opportunity
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … away in wood, converting it into their own carbon-rich structures, as well as atmospheric carbon dioxide.  Summary …
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