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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … metabolic changes they’ve undergone. The Impact The number of microbes in, on, and around the planet is an astronomical … for User Science (FICUS) collaborative science initiative between the  U.S. Department of Energy (DOE) Joint Genome …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis … Science” (FICUS) initiative .  Q: What is the difference between “regular” proposal and a consortium-type proposal? …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … , researchers led by Hal Alper at The University of Texas at Austin and Michael Jewett of Northwestern … Yi visited the Jewett lab to provide a seamless transition between the in vivo (within the cell)and in vitro (outside …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot … with another team on predicting host-virus connections between all viruses in  IMG/VR (Virus) and the GEM catalog, …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated … the discovery of regulatory cascades as well as crosstalk between sigma factors. While characterizing sigma factors is …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The … annotation methods, it was possible to distinguish between metabolic genes found in the viral genome versus …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the … The multiple waste streams were a collaborative effort between JGI’s Safety office, the Safety & Wellness (SWELL) …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the … the momentum of a Memorandum of Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  … volatile organic compounds. This was the seventh FICUS call between EMSL and JGI since the collaborative science program …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Through the Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in …
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