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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold … peatlands store approximately one-third of the world’s soil carbon. The process to harvest energy-generating peat … (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and … the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … their powers in agriculture, pharmaceuticals, biofuels and beyond.  … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular Biologist at the … distachyon is a small annual grass that is well suited to experimental manipulation in the laboratory because of its compact genome, diploid …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed … that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants … Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to … can offer scientists a more colorful palette of options; beyond off and on, scientists can determine the level of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … is a perennial grass that quickly grows in a variety of soils and water conditions, standing taller than basketball … customize the crop for additional end products. The genetic diversity within this set of plants, each with a …
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Three Join the JGI User Executive Committee
… month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and … of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go … is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, University of Crete, … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …
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