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JGI@25: A Single Cell, Myriad Microbial Discoveries
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … in carbon fixation in the dark ocean. Combining single cell genomics and synthetic biology, a team studying microbial …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… York Times 2022 List of Firsts as well as other year-end science discovery lists.  Updates to the Genomic … in  a switchgrass study that delved into the nuances of the plant’s genome . A candidate bioenergy feedstock, … crop, as well as the discussion of key cassava genomic resources. Genome annotations for cassava are available on the …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the next … vegetation. In return for their services, bees eat plant nectar and pollen. Nectar is an easily absorbable … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… determination as they came onsite. From data carpentry to science communications, their schedules were filled with … Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first discover new methods with tools …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science … complex biological and environmental systems. We optimize our service to the community through responsibly managing our people and resources.   Director's Perspective     …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab informatics. Prior to joining JGI in late …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their … genes from all possible candidate ancestors are available. Our method clearly identifies the four subgenomes based on …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why … —  through the  New Investigator call under our Community Science Program.  Below find a list of the first 10 …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to … and mathematics (STEM) workforce. In doing so, it is our ambition to further develop a more diverse and inclusive …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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