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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … done to gain insights into gene families involved in adaptations seen in later plant lineages. The team found that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was supported in part by the Allen Distinguished Investigator Program, through The Paul G. Allen Frontiers Group, the …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … nutrient flux in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The … The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The fungus that made itself at home
… dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have gained … from Europe, that was sequenced and analyzed by the JGI. The researchers found that S. lacrymans var. lacrymans …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding … economically important because of their use in industrial materials, pharmaceutical products, and as biofuel … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to …
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Virus Discoveries that Keep Getting Bigger
… from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel viral …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … More genome copies in switchgrass leads to increased climate flexibility …
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W. Berkeley Kauffman
… His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and … Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held …
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