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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… and eight graduate students, hosted by 18 JGI staff. One of the mentors, postdoc Yumary Vasquez, was herself a … Outside of the technical aspect of her project, Hour mentioned that she had gained knowledge in bioinformatics and … to see what some of the interns had to say about their time at the lab. …
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A Complex Confection Decoded: Sugarcane Reference Genome
… accounts for 80% of sugar production worldwide, but has one of the most complex genetic blueprints. Assembling a … assembly not only includes a full representation of the diversity present in R570 but shows the genomic effects of …
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An Automated Tool for Assessing Virus Data Quality
… of the blind men who encounter an elephant for the first time. Based on the single body part each blind man touches – … contiguous sequences (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the …
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Statement on the Use of Genomics Data
… records from search indexes and BLAST databases until such time that JGI indicates the data should be publicly … to address some of the most pressing challenges of our time. For more information, please visit  …
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Effect of oxygen minimum zone formation on communities of marine protists
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Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones
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Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… the van Niel Prize, the committee recognized Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and … and around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” …
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Improving the Cacao Genome and Phytozome
… Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating … JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome annotation was … to address some of the most pressing challenges of our time. For more information, please visit  …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The … collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, researchers have discovered and characterized a novel … University release  MSU scientists’ discovery in Yellowstone ‘extremely relevant’ to origin of life …
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Streamlining Regulon Identification in Bacteria
… three distinct RNA polymerases; in bacteria there is only one type of RNA polymerase responsible for each gene. These … well as a sigma factor. While all bacteria encode at least one principal sigma factor responsible for transcription of … sets associated with functions like stress responses and cellular differentiation. The tough part is identifying the …
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Dan Rokhsar
… is focused on understanding the origin, evolution, and diversity of plants and animals by combining computational …
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