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From bench to biotech: how a CURE cultivates student self-efficacy, gains in scientific thinking, and career aspirations
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JGIota: The Algae Nicknamed ‘Chlamy’
… episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC … plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its … Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of … is typically observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new … has some amazing resources and people — not just the instrumentation — but the experts we were able to work with on … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Graduate Students Get Thesis Research Opportunity at the JGI
… the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … and metabolism, work on which she will expand with her study of microbes in California’s manmade water transport … lab at the University of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist … for future single-cell projects.” The Berkeley Lab  Biosciences Area has been leading efforts in developing and …
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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … Q: Can you give us an idea about the scale of an average study? How many samples are typically involved? How long … Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile for a not very well studied …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have … (Berkeley Lab). All of the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy … outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … call. Richard Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region … by allowing the generation of preliminary data for a larger study.” …
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