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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth System Science” 11:18am …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … that methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” … the other five only distantly related to known methanogens. With the help of this information, the researchers found …
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and … Phytozome (and in the BioMart data warehouse). We are still working out the best protocols to allow us to update …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to … displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … this fundamental observation of cold and warm microbial networks, and just how clear and stark the biogeographic …
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Open Frameworks Training the Next Generation of Scientists
… Pathogens , a team of faculty and researchers describe a workforce development program for higher education that … participants. Over the past two years, Myco-Ed has been used in 15 individual classrooms across the country, … for both student and faculty researchers. Aligning with this overarching goal, Myco-Ed is a partnership …
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Styling for Safety: PPE, It’s the JGI Way
… is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE or Personal … These injuries and illnesses may result from contact with chemical, biological, physical, mechanical, or other … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Jasmyn Pangilinan
… provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she works to develop and improve supporting pipeline efficiency …
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The Fungi That Survive In Antarctica
… organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … (NERSC) has another supercomputer, Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed Marsarchaeota. The … (thermophilic) microbes are of interest for their potential use in number of biotechnological applications. Molecular … lineages found there and elsewhere provide researchers with insights into the evolution of life on Earth. For …
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The fungus that made itself at home
… the dry rot ( Serpula lacrymans ) is so destructive in houses. A study involving six brown rot fungi reveals the … for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the fungus has … to see how the Serpula fungi have adapted in an environment with little to no competitors for resources. On wood blocks …
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