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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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Gotta Catch 'Em Gall
… ways to engineer plants. So they’ve looked into wasps that program oak trees to raise their young in structures called … unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … This is also the type of synergistic and collaborative community spirit that the JGI advocates for and actively …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… presentation, interactive panel discussions, workshops, and informal networking events. JGI will present both a genome … and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Taking Stock of the Known and Unknown Microbial Space
… microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … playing key roles in regulating global nutrient cycles. The information gained from understanding the interactions …
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A Journey Through the Evolution of the Mitochondria Internship, A Sequential Read
… in participating in the famous JGI-UC Merced internship program. …
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Scaling Up Existing Skill Sets
… six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with the JGI … graduate student at Stanford University in the Biophysics program. (Graduated from UC Merced in Spring 2019.) Mentor: …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In addition to … Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value of taking a look at the AT … metabolism, this team built a phylogenetic tree using bioinformatic software called FastTree and identified 62 …
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Rex Malmstrom
… a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a …
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At the Forefront of Terrestrial Virus Research
He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… internship experiences have influenced their careers in science. Hear more about what they learned from working with … valuable because in this time that I’ve been in my PhD program, I’ve been really focused with academia. And so this … with big data, but something that I learned from this program was how to use Python, um, from the week long Python …
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Dispatches From JGI Interns
Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to …
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