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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … that indicate repelled attempts to infect and lyse the microbial cells. This demonstration of the virus-host arms …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a … reusable, and more insightful, for the future of studying microbial communities.   …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic … microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in name first … outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … has changed our understanding of the microbiome and the microbial sciences field. Roux will be recognized at the …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … they belong. This study provides further insights into the microbial involvement in carbon and nitrogen cycling and …
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IMG Webinar Series
… Find a series of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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DAS Tool for Genome Reconstruction from Metagenomes
… The Impact Understanding how individual microbes interact with each other in a community, and characterizing their … genomes, particularly from incredibly complex soil microbial communities, is crucial to understanding how these … improving methods for isolating and characterizing entire microbial genomes from sequences generated from …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals … State University and colleagues are interested in the microbial communities that live on Alaska’s glacially … public agricultural research corporation, is focused on microbial interactions on the Amazon forest floor. Alicia …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… lead the Forest Pathology and Mycology Laboratory. Together with his colleague Douglas Schmidt and UC Davis professor … researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of Energy Office of … the state, the UC team designed a set of engagement activities under the umbrella of the SOD Blitz Project. In …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial communities, scientists have historically been …
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Graduate Students Get Thesis Research Opportunity at the JGI
… pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have access to unique lab … to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in … Susannah Tringe, JGI’s User Programs deputy and head of the Microbial Systems group. Tringe’s research group focuses on …
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JGI@25: From Life at the Extremes to Editing Genomes
… National Laboratory – jointly the Nobel Prize in Chemistry with Emmanuelle Charpentier of the Max Planck Institute! … Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine …
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