Results

A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Ice cover extent drives phytoplankton and bacterial community structure in a large north‐temperate lake: implications for a warming climate
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. … study shows highly reproducible physiology and depletion of soil metabolites by a model grass New Phytologist 222: …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds …
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