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Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … is unusually cosmopolitan. In the ocean’s North Pacific Subtropical Gyre, microbes tend to stay localized at different … #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading …
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Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale
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Long-term CRISPR locus dynamics and stable host-virus co-existence in subsurface fractured shales
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … yields in other grasses. The team conducted several large-scale field experiments and analysis to find relationships … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Genetic Elements and CRISPR Spacers in the Conifer Needle Microbiome Carlos Vazquez and mentor Bryce Foster, …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold … get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  …
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Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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