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Biases in genome reconstruction from metagenomic data
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A Catalog of Reference Genomes from the Human Microbiome
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mSphere of Influence: the View from the Microbiologists of the Future
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Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host.
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an … for the first time, that this group is unexpectedly powerful: they can whip up dozens of complex natural … was performed under the JGI-EMSL Collaborative Science Initiative and used resources at the DOE Joint Genome …
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley … led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal … to learn more about the program's areas of focus, major initiatives and more.  …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … – the complete set of RNA molecules transcribed from all the genes within a cell or tissue at a specific … handling 18 different species is beyond the capacity of a single lab. Growing different species poses significant …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their … In addition, Dr. Cole is focusing on how individual plant cells respond to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, … of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … to be moved to private status. This will remove records from search indexes and BLAST databases until such time that …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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