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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … large-scale data, and professional expertise to support the global research community in studies of complex biological …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … the CRISPR-Cas9 tool for a non-conventional eukaryotic host — an approach, the team says, that could be applied to …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … genomes to a diploid state while retaining multiple copies of some genes. This polyploidization process is ongoing and … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature …
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JGI Scientists Pen Genome Watch Articles
… Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … great science that will help solve energy and environmental challenges.   Usually, plants have the upper hand against … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics … and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … great science that will help solve energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a … polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green Genomes …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … is poised to become an essential tool for researching global viral diversity. geNomad has already been downloaded … The U.S. Department of Energy Joint Genome Institute …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from … sustainable biomaterials, and developing high-throughput methods to reveal metabolic pathways that could ultimately …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … great science that will help solve energy and environmental challenges. Sorghum stands out as a candidate feedstock for … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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