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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass into … were subjected to a monthlong drought, and then half the plants were watered just before harvesting. As HAL2 has …
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Nikos Kyrpides
… Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … BA in Biology, Aristotle University of Thessaloniki, Greece …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … our understanding of life’s genomic code, advancing DOE efforts of achieving a predictive understanding of biological …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into … type of microbes that break down plant matter. This means plants don’t fully decompose in peatlands, and so carbon … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, … This work was supported by the NSF Dimensions of Biodiversity Program …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … entirely new capabilities through partnerships with bacterial symbionts, and how others revolutionized their …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse … Find more details on the instrumentation we use and our methodology for …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to … Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, JGI User … Many fungi have beneficial symbiotic relationships with plants and bacteria; in many instances, fungal physiology is …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … production, a greater understanding of terpene synthesis in plants will be important for alternative fuel development in …
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A pipeline for targeted metagenomics of environmental bacteria
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