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Learning to Look
… these genes are similar in size and function to those in typical bacterial or archaeal genomes, the sequence is most … virus group,” said virologist Mart Krupovic of the Institut Pasteur, one of the study co-authors and an expert on … Instead, she said, the inoviruses she studied “piggyback” off the anti-CRISPRs made by the co-infecting …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… organism — one previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species … plant pathogens cause disease and how to control them. Despite advances in the years since this landmark publication, … sequence in hand, the UC team led the charge to develop rapid diagnoses for SOD. These techniques were also …
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Tracking the Origins of Methane-Producing Microbes
… “superphylum” where this type of methanogenesis is typically observed, but to the “TACK” superphylum,” said study …
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Training the Next Generation of Talent
… worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a … conducts cancer research. Lawrence’s project had him developing a framework that would allow users to simultaneously … he also took a long view of the opportunity. “I’m getting a picture of the amount of data that’s going to be generated …
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Fishing for Novel Cellulose Degraders
… to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. … they uncovered a novel cellulose-degrading bacterium typically found in low abundances. The Impact Microbes are …
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A One-Stop Shop for Analyzing Algal Genomes
… as biofuel feedstocks. Understanding the genetic underpinnings responsible for these traits takes us closer to … algae into one place, PhycoCosm allows users to easily compile data that answers what genes are present in which …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… of microbiomes. This is key because these examples were picked from some of the top ecosystem-differentiating … phase classifications can be seen on the tool, mapping out similar regions of tetranucleotide frequency. This … Energy Research Scientific Computing Center’s (NERSC) SPIN environment and linked from IMG. …
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Effects of Polar Light Cycle on Microbial Food Web
… this study found that the green sulfur bacteria population spiked to 83%, only to dramatically fall to 1% in early …
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The JGI Data Portal: Improving User Experience
… company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal … a calendar reminder to download restored files Copy-and-paste curl commands for faster API downloads “Currently, our team is wrapping up work on the …
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Pinning Down a Piece of Photosynthesis
… sugars. How photosynthesis works, though, is much harder to pin down.  Photosynthesis appears to have a lot in common … regulator that can make the link between photosynthesis, respiration and high-iron homeostasis,” said Nicolas Grosjean, … provide a list of machine parts, and an idea of their groupings.  One pivotal effort along these lines came from UC …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… surprise of the project was to realize that these genome copies that are spread throughout the whole cell are actually … that contain DNA clusters. He dubbed these organelles “pepins,” after the small seeds in fruits. DNA clusters were … than most bacteria and hundreds of thousands of genome copies (polyploidy) that are spread throughout the entire …
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Understanding Wildfire Recovery, Starting in Soil
… fire changes the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, …
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