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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, … DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … ,” Gonzalez-Rizzo explained. “This kind of discovery opens new questions about bacterial morphotypes that have never …
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Boosting Small Molecule Production in Super “Soup”
… would be transformative at industrial scales. “Cell-free systems have been really powerful at finding ways to … of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their ability to redirect the carbon in … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Gut Fungi: Unexpected Source of Novel Chemicals
… can whip up dozens of complex natural products, including new ones. The Impact In the past, natural products have been … biofuels. This work shows that anaerobic fungi might be a new source of novel compounds to help bolster the … anaerobic fungi synthesize molecules that are sources of new chemical diversity; the team identified what looked to …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   Although … of Science User Facility, has been developing and applying new genomics capabilities that address these issues. Check …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for …
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Four Researchers Join JGI User Executive Committee
… community to study complex biological and environmental systems. The foundational studies enabled contribute to the … are regular participants of the JGI annual user meeting and New Lineages of Life symposia. Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in the UEC, Bik …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
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