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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere from … despite extremely harsh conditions. And their survival secrets could one day help other organisms survive hotter, … are working with scientists from around the world – and the JGI – to understand them better. …
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2023 Progress Report
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Better Living Through Bioenergy
… research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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Microbial Genomics & Metagenomics (MGM) Workshop
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov … is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile … all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad identifies … gene content and their genetic sequences. The software was created by researchers under the direction of Microbiome …
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The Mobilome in the Mire
… have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that … light, and opening up new options for engineering these microbes in the future. Join Sarah Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal … how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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How to Target a Microbial Needle within a Community Haystack
… capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A … researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, tested and deployed a pipeline to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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