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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant root …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … “The JGI DNA Synthesis Science Program has been instrumental in establishing larger-scale research projects in … and her own as an early career researcher. “We were able to study hydrocarbon biosynthesis at a scale that would …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The Science Cyclic … metal corrosion in oil pipes. Scientists have tried to study cyclic di-GMP and cellular networks with fluorescent … The work conducted by the U.S. Department of Energy Joint Genome …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying photosynthesis and cell motility. It’s also a model … C. reinhardtii on PhycoCosm … C. zofingiensis on Phytozome …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes … of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … Communication Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior … studies. We also looked at the cross-species comparable study, where plants were subjected to three nitrogen sources …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial … University of Delaware BA in Biology, Boston University ( magna cum laude ) …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down … project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER funds) to F.J.R.-D., S.C., and …
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A Model System for Perennial Grasses
… The Science Researchers have developed a genomic model to study drought tolerance in perennial grasses using Panicum … complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … plant biomass into sustainable fuels for cars and jets. By studying a close relative model species like P. hallii , …
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are … be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which …
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