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Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … Communication Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior … expression groups, differential expression, co-expression network analysis, and ortholog function descriptions from …

… the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics … Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz et al. 2022. Giant virus …

In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … in so many different species, there was a good chance that nature was using it to do something important.” Related …

… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … but these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …

… “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial symbiosis. Further, … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …

Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … Q: Can you give us an idea about the scale of an average study? How many samples are typically involved? How long … data (secondary metabolomics), how can we map it into these networks? A: We use networks based on the fragmentation …

Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …

… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE … researchers with a powerful addition to their toolkit to study gene function. As a demonstration, the researchers …

… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have … automated aspects of a commonly-used process for studying microbial communities, with results published in … labor and improve results. Applying this method to the study of a particular fungi, researchers identified novel …

… never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included the discovery of candidate genes that confer …

… science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to …