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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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JGI User Executive Committee Expands
Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron … more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal evolutionary ecologist … or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …
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Graduate Students Get Thesis Research Opportunity at the JGI
… to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in coastal mangroves. The work … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due … We work with start-ups and mature companies, as long as the data are not proprietary. In addition, the JGI has a …
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Evolution of a Fungal Gene Expression Regulator
… ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal Genomes … exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & Evolution , a team led by Robert Schmitz at …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … genomes and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… within their rumen. There is another climate-minded reason for studying rumen: Livestock live off plant matter, and … podcast minisode. To date it is the single largest effort to provide a cataloged and curated culture and genome … editing in RNA, rather than DNA alone. “It has become a tool widely used,” Leahy told JGI recently when we caught up …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach
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