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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for … do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem …
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M … Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant microbiome. They also took part in many enriching …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … evolutionary history. Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with … (a third of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely …
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards … Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… in this hypersaline environment, which can range from 8% to 28% salinity. We have toxic metals, so these concentrations … And so we also sequence a lot of fungi, and we sequence plants. And so we started thinking about if we had a … sees that people are working on that, that lets you sort of plant a little bit of a flag, maybe, but also gets other …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … Many fungi have beneficial symbiotic relationships with plants and bacteria; in many instances, fungal physiology is … The proposal targets the CSP focus area in plant microbiomes, as well as those in inter-organismal …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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