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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of … how soil ecosystems function. He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single cell samples using our …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests … gene clusters in bacteria and fungi. Prior to joining the JGI, he spent time as a faculty member at the University of … HPC consultant with NERSC. Dr. Udwary co-hosts JGI’s "Natural Prodcast" podcast, a "fireside chat"-style …
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Benjamin Cole
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Hiroshi Otani
… of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship … Visel explained. She continued working virtually with her JGI mentors for nearly three years after her internship. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is octoploid (eight … each chromosome). All of these genomes are available on the JGI plant portal  Phytozome . “The broad applicability of …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … school.  The interns from this cohort and their respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk … Yumary Vasquez : So this summer what I learned at the JGI is how to really work in the government lab. And I find …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a … to develop a tool that leveraged machine learning to help users determine which computer program would best serve …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … own perspectives. The interns from this cohort and their JGI mentors are listed below, along with their project focus … is Dr. Jonelle Basso. Shayna Bennett : So while here at the JGI, I’ve been studying mobile genetic elements and CRISPR …
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