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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … to successfully domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” … , the team used CRAGE to insert a fluorescent marker into  E. coli , allowing the team to model the competition …
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JGI User Executive Committee Expands
… affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the …
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Nikos Kyrpides
S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global … Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… by the Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures GmbH, based in …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it … impressive amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at … Data & Samples tab. Front their you can click on Data and into the Data Portal where if you click into a data product, you can read more and download the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… much damage to the hosts, but they are carriers of several viruses (e.g., Lettuce big-vein associated virus LBVaV; genus Varicosavirus ) which may severely reduce crop yields. Like the …
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Crysten Blaby-Haas
KE, Chan CX, Marriage TN, ... and Prochnik S. (2017) Insights into the red algae and eukaryotic evolution from the genome …
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The More the Merrier: Making the Case for Plant Pan-genomes
… de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s … conditions, and then collected root, leaf and rhizosphere (soil surrounding the root) samples from the plants at the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… to past climate change will provide unprecedented insight into the mechanisms that perennial grasses have and will use … New findings from this line of research combined with past insights will allow the identification of potentially novel …
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