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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
Learn more
Complete Genome Sequence of the Subsurface, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio aespoeensis Aspo-2
Learn more
Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … fungal cells. Using a technique called single nuclei RNA sequencing, the researchers identified different cell types … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
Learn more
An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … fungal cells. Using a technique called single nuclei RNA sequencing, the researchers identified different cell types … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
Learn more
From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
This was facilitated in part by RNA library preparation and sequencing from the U.S. Department of Energy (DOE) Joint …
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How to Target a Microbial Needle within a Community Haystack
… for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … about environmental samples starts with researchers first sequencing the complex community and then separating out the … less diverse pools before being subjected to genome sequencing. Various fixation protocols were also tested as …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… available but also complementary single-cell sorting and sequencing of viruses together with their unicellular … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … individual organisms, using various methods for processing, sequencing and analysis. “Using a technique called … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
Cone Pool in Mono County, California, scientists have used sequencing methods for the first time to comprehensively … more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, postdoctoral … at Lawrence Berkeley National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect …
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Tracing the Evolution of Shiitake Mushrooms
… at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling … a potential conservation threat for wild species. Sequencing across genomes also provided an opportunity to … from eight different countries. Genome and transcriptome sequencing were enabled by the Community Science Program …
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JGI Early Career Researchers Featured in mSystems Special Issue
… (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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