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Transcription Factor Amr1 Induces Melanin Biosynthesis and Suppresses Virulence in Alternaria brassicicola
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers the sound — … ecology. They store carbon and cycle key nutrients like nitrogen and phosphorus.  This way, the fungi of forest … suggesting these guilds share the responsibility of recycling fungal dead material. The Reference Genomes that …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science … of microbial enzymes, which could have a plethora of potential applications to industrial processes. Summary JGI … and Development program (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … species compared with farmed cultivars, highlighting a potential conservation threat for wild species. Sequencing …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … microbial genes. These genes were identified based on their potential to efficiently degrade lignocellulose in cow …
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … for bioenergy production and algae’s roles in nutrient cycling, now a facet of the  Fungal & Algal Program . For … three groups: cyanophages, bacteriophages, and giant algal viruses.  The approved proposals started October 1, 2020 and …
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Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite
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Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence
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