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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … on the UEC is an opportunity to help develop the JGI’s community outreach efforts with diversity, equity and … collaborators and other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … We estimate the overall atom enrichment within the bulk community DNA, and that gives us a rough estimate of whether …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … environmental samples  sequenced by the JGI through the  Community Science Program and was already available on the …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial … that bacteria living within a host (endosymbionts) have on fungal host reproduction, and the reproductive genes they … the National Science Foundation and the National Institutes of Health. The work conducted by the U.S. Department of …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model …
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Refining the Process of Identifying Algae Biotechnology Candidates
… to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … transcriptome to learn more about which genes expression patterns. The analysis led to the identification of several … This research was supported by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … of all kinds,” noted Igor Grigoriev, head of the JGI’s Fungal & Algal Program, including work with Olivier Vallon …
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The genome of Tetranychus urticae reveals herbivorous pest adaptations
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Glycine max on Phytozome … Fungal Datasets …
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