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… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus mining. After a couple …

… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature … genomics and metagenomics of the microbiology-focused groups at the Joint Genome Institute, it is fantastic that …

… a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) …

High-throughput stable isotope probing helps ID novel interactions between … The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … microbial DNA is manually separated into a few different groups based on its density — DNA containing isotopes is …

… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … said Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a semi-automated, … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled …

… 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a means … Project Coordination Rekha Seshadri,  Functional Annotation Group Natalia Ivanova, Functional Annotation Lead Juan …

… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. Department of Energy … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, …

Tracking evolution of symbiotic lifestyles across multiple … results validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …

DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences (SNS). During his … in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship Program. …