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Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Natural Prodcast
Natural Prodcast is a “fireside chat”-style podcast about … to the chemicals that make species unique and different from one another. They are incredibly important to medicine, … JGI acts on its goals in — and builds out its capabilities for — secondary metabolism research, “Natural Prodcast” …
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity At first … National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … symbionts in sulfur-rich mangrove sediments not far from his lab when he first encountered the bacteria. “When I …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome … link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science … transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows …
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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High-resolution phylogenetic microbial community profiling
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