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Dan Rokhsar
… Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … Laboratory 2000 John Simon Guggenheim Fellow 2000-present Program Director, Berkeley NHGRI Training Program in Genomics and Computational Biology …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to … But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Integrating Experimentation with Data
… Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their joint meeting! … JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to … by the DOE's Biological and Environmental Research (BER) program.   …
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MGM Workshop at Fisabio Summer School 2026
… professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … sharing concepts, tools and research results in genomics, metagenomics and the human microbiome. The workshop will … Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work with Nadia … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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JGI@25: Solving the Mystery of the Missing Oil
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… the Molecular Foundry (TMF) for their collaborative user program. The portfolio of research proposals integrates genomics with nanoscale science, all aimed at accelerating discoveries and … leading approved proposals with free access to their resources and capabilities to advance their DOE …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the metabolic …
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Computationally Classifying Fungal Lifestyles
… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have …
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