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JGI-KBase Panel at SACNAS
… scientific contribution they make, whether as part of a course or internship, and before ever publishing a research … of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their contributions to science. A panel of DOE researchers, program managers, and …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria … and Saganbacteria were named for Carl Sagan, a renowned science popularizer and communicator (and at one time, the … working to address some of the most pressing challenges of our time. For more information, please visit  …
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Crysten Blaby-Haas
… engineering. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … (2015) where she co-founded and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area …
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Mindfully Moving JGI
… 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in one long … week up and operating is a great story and a testament to our extensive move planning efforts!” cheered JGI’s … Berkeley Lab . “While we’re getting rid of stuff, our effort in this cleanup is not just to clean out the …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the …
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Extracting the Secrets of Secondary Metabolites
… helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not … Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” 2013 … Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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JGI Early Career Researchers Featured in mSystems Special Issue
… beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on … National Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their … genes from all possible candidate ancestors are available. Our method clearly identifies the four subgenomes based on … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded …
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