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Partners
The JGI leverages its existing partnerships and develops others providing complementary … and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support … data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature … he and Rokhsar came up with: Until they came up with this new method, Session mentioned that the analysis for …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … in their academic career enjoyed the chance to develop new skills needed for their PhD research. And for the first … the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … the need for a more comprehensive exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference …
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Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … Ray and it has been especially called on in the move to the new building where that was really critical. It takes a … co-localization of JGI and KBase at the Integrative Genomics Building (IGB). Said Michael Brandt of Ray, “You …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … a foundational data set that is now available through a new  single-cell data viewer that was collaboratively … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for …
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Cultivating the Bacterial Microbiota of Populus Roots
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A catalog of the diversity and ubiquity of bacterial microcompartments
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Persistence and plasticity in bacterial gene regulation
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Atomic-Level Models of the Bacterial Carboxysome Shell
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by killing … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, …
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