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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … to develop a tool that leveraged machine learning to help users determine which computer program would best serve … the beginning of this much longer-term body of work, the experience helped to solidify Lawrence’s interest in …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Mateus Fiamenghi
… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI …
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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the … collaborative working environment I have consistently experienced each visit through my PhD. This environment …
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First Monoploid Reference Sequence of Sugarcane
… a quarter of the world’s ethanol production from sugarcane. Improving sugarcane breeding methods using molecular biology … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI was part of an international team led by researchers …
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Streamlining Regulon Identification in Bacteria
… coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the Camille and Henry Dreyfus Foundation, and the JGI Synthesis Program under FP00005685. In addition, M.D. …
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