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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … down hardy plant cell walls and therefore hold clues to how humans could do the same on an industrial scale to produce … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over …
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JGI@25: Stories from Intern Alumni
… anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our … challenges. Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. … wet lab experiments, to computational modeling and virtual projects, hear intern alumni Candace Cole, Alessandro …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … essential to their economies. It also plays an important role in soil health through nitrogen-fixation and holds … classes of beans.” … P. vulgaris on Phytozome … Plant Datasets …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley … the Research Center One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and … are excited to continue our fruitful collaboration in the microbiome space that has resulted in many impactful papers …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of … for the internship program, but it also helped her in her role at the Lab as well.  One of the 2015 program alumnus …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day … genomics studies, offering insight into genes critical for roles including plant growth and cell wall development.  M. … , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers … (BGCs). BGCs make diverse molecules of value to both human and ecosystem health. But bacteria often fail to … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental …
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A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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