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Genomic sequencing of single microbial cells from environmental samples
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our … challenges.   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… led by UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … expressing, the team sequenced their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric called …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base … Fungal Genomes initiative of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference genomes …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate … for their PhD research. And for the first time in this program’s history, two interns returned to re-engage with …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation … of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced analysis …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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