Results

Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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Proteome reallocation enables the selective de novo biosynthesis of non-linear, branched-chain acetate esters
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a …
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PhycoCosm Tutorial
… analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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